PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986172.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 211aa MW: 22929 Da PI: 7.947

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986172.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.2	1.3e-38	14	115	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+k+C++ap+f ++q ++ fa+vhk+FGasnv+kll +lp + r++a+ ++ yeA+ar++dPvyG+v+++ +l+qq++ l+ael XP_024986172.1 14 PCGACKFLRRKCVKGCIFAPHFSSDQgAALFAAVHKVFGASNVSKLLMHLPVHWRNHAVVTISYEAQARLSDPVYGCVSTVVALKQQVAALQAEL 108 7***********************889************************************************************** PP DUF260 95 allkeel 101 a+++++l XP_024986172.1 109 AMVQNQL 115 *9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MAAPPESGST PTTPCGACKF LRRKCVKGCI FAPHFSSDQG AALFAAVHKV FGASNVSKLL 60 MHLPVHWRNH AVVTISYEAQ ARLSDPVYGC VSTVVALKQQ VAALQAELAM VQNQLINNRV 120 MAANALQGSL QQPQAVHHPR WLQPEYSNAS NNNMINMSSF QSSQNNLAGD HQTAVDLQPS 180 FDPLQFSRPY GENGEGSGDL LAFAEQMFHP R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	5e-51	LBD family protein