PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986226.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 368aa MW: 40869.8 Da PI: 5.5683

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986226.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.3	6.6e-33	191	249	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsY+rCts C vkk+vers++dp++v++tYeg+H+h+ XP_024986226.1 191 LDDGYRWRKYGQKAVKNSPFPRSYHRCTSVACGVKKRVERSSDDPSIVITTYEGTHTHP 249 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MDKKEEVKNN AENSNSMANS TFSDQIPAVY ATGGGGGGYF DIPQGYLDML AFQDYGGASL 60 FDLLQQPTPP PNLVVEEQQQ QQQQQNHPPP ATVLGEPSIP PPVSTVPETA EMVNTPTQNS 120 SSISSSSNEA ANNVDQENNK RSAQEEDEEQ HDDDDDQEKI TNKQLKPKKK NPKKQREPRF 180 AFMTKSDIDH LDDGYRWRKY GQKAVKNSPF PRSYHRCTSV ACGVKKRVER SSDDPSIVIT 240 TYEGTHTHPY PMMPRGTIGI LPENAGYGGL SGGNGGNGGV SSFLFTQPHY QQQLHPQLQP 300 YFHNQTTPSS SLSFSTTNTS AHPSSYSHFL QERRFCPSPS ASLLRDHGLL QDVVPFEIRK 360 DEPKEEQN

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MDKKEEVKNN AENSNSMANS TFSDQIPAVY ATGGGGGGYF DIPQGYLDML AFQDYGGASL  60
FDLLQQPTPP PNLVVEEQQQ QQQQQNHPPP ATVLGEPSIP PPVSTVPETA EMVNTPTQNS  120
SSISSSSNEA ANNVDQENNK RSAQEEDEEQ HDDDDDQEKI TNKQLKPKKK NPKKQREPRF  180
AFMTKSDIDH LDDGYRWRKY GQKAVKNSPF PRSYHRCTSV ACGVKKRVER SSDDPSIVIT  240
TYEGTHTHPY PMMPRGTIGI LPENAGYGGL SGGNGGNGGV SSFLFTQPHY QQQLHPQLQP  300
YFHNQTTPSS SLSFSTTNTS AHPSSYSHFL QERRFCPSPS ASLLRDHGLL QDVVPFEIRK  360
DEPKEEQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	4e-52	WRKY family protein