PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024986311.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 324aa    MW: 36534.9 Da    PI: 6.9057
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024986311.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.93.4e-5261331128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtdeel+ +yLk+k+eg ++el evi+ v++yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nrat++gyWkatg+d++v+
  XP_024986311.1   6 LPPGFRFHPTDEELIGYYLKRKIEGLEIEL-EVIPVVKLYKFDPWELPeKsFLPKQDMEWFFFCPRDRKYPNGSRTNRATNAGYWKATGNDRKVV 99 
                     79****************************.99**************95344555788************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s k+++ g +ktLvfy+grap g +t W+mheyrl
  XP_024986311.1 100 S-KSSVLGYRKTLVFYRGRAPFGDRTAWLMHEYRL 133
                     *.9999***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MGSVSLPPGF RFHPTDEELI GYYLKRKIEG LEIELEVIPV VKLYKFDPWE LPEKSFLPKQ  60
DMEWFFFCPR DRKYPNGSRT NRATNAGYWK ATGNDRKVVS KSSVLGYRKT LVFYRGRAPF  120
GDRTAWLMHE YRLCDDVSHG TPSFQGSFTL CRVMKKNEQK TSYVNSEPKT KGIGSGSSNR  180
YSNSIQVTNE PIGNESSFSS PLTSYQKTPI SNEPATSTGP SDPPSFWVSP ALILDSSKEQ  240
TGGQEGRSGC VKQNKFPKPT IPRQPHDQFG ISPSSSYSNF TEEDDLIRFG CMSPYSGDES  300
LMGFFGIEDP TSYEPCDWTN SLEI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.18e-99NAC family protein