PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024986312.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 259aa    MW: 30170.2 Da    PI: 7.7923
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024986312.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.14.9e-51361613128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      GfrFhPtdeel+ +yLk+k+eg ++el evi+ v++yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nrat++gyWkatg+d++v+s 
  XP_024986312.1  36 LGFRFHPTDEELIGYYLKRKIEGLEIEL-EVIPVVKLYKFDPWELPeKsFLPKQDMEWFFFCPRDRKYPNGSRTNRATNAGYWKATGNDRKVVS- 128
                     6***************************.99**************95344555788**************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     k+++ g +ktLvfy+grap g +t W+mheyrl
  XP_024986312.1 129 KSSVLGYRKTLVFYRGRAPFGDRTAWLMHEYRL 161
                     9999***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MLVLNNGKLF AILEKKFCVA KSFYFWIFQI FSRYSLGFRF HPTDEELIGY YLKRKIEGLE  60
IELEVIPVVK LYKFDPWELP EKSFLPKQDM EWFFFCPRDR KYPNGSRTNR ATNAGYWKAT  120
GNDRKVVSKS SVLGYRKTLV FYRGRAPFGD RTAWLMHEYR LCDDVSHGTP SFQEQTGGQE  180
GRSGCVKQNK FPKPTIPRQP HDQFGISPSS SYSNFTEEDD LIRFGCMSPY SGDESLMGFF  240
GIEDPTSYEP CDWTNSLEI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-78NAC family protein