PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986345.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 325aa MW: 36950.3 Da PI: 6.4298

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986345.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.8	1.7e-15	14	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 rg W++eEde+l++ ++ +G g+W+ ++++ + R++k+c++rw +yl XP_024986345.1 14 RGLWSPEEDEKLIRFITTHGYGCWSEVPEKAVsgLQRCGKSCRLRWINYL 63 788*********************************************97 PP
2	Myb_DNA-binding	53.2	7.1e-17	69	113	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E++l+++++ G++ W+ Ia++++ gRt++++k++w+++ XP_024986345.1 69 RGKFTPDEEKLIINLHSVVGNK-WAHIASHLP-GRTDNEIKNYWNSW 113 89******************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence
MGQHSCCNQQ KVKRGLWSPE EDEKLIRFIT THGYGCWSEV PEKAVSGLQR CGKSCRLRWI 60 NYLRPDIRRG KFTPDEEKLI INLHSVVGNK WAHIASHLPG RTDNEIKNYW NSWIKKKINR 120 KPSSTSMTTR RLSTSSTSMD QPHSDYGYNP THLSFLNQDL GINNIKQPIQ EQPVISSSSS 180 SLFMLDTSGS VLEGQNGDCI TQTEFFNDSM WQIHKNQIPE LSSQVLNFTT NNNGMYSSYL 240 PPLMENLESM VEGQNCHLTN GEGRECLIQK QHEFNGWVVD QTSQQCPSYL FWDDEHQEVQ 300 LGGEEIGVPS ASNMGPILSS YPTSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63910.1	7e-90	MYB family protein