PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986461.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 227aa MW: 23929.2 Da PI: 8.3224

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986461.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.3	5.2e-38	25	126	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++Cv+apyf +eq +++fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ar+rdPv+G+++++++lqqq+ +l+ae XP_024986461.1 25 PCGACKFLRRKCVAGCVFAPYFDSEQigTAHFAAVHKVFGASNVSKLLHNIPVHKRLDAVVTVCYEAHARLRDPVHGCLAHLFALQQQVVNLQAE 119 7********************999777**************************************************************** PP DUF260 94 lallkee 100 +++ +++ XP_024986461.1 120 VSYFQAH 126 *998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence
MSANPSTSHT GGGGGGGGSS SSGGPCGACK FLRRKCVAGC VFAPYFDSEQ IGTAHFAAVH 60 KVFGASNVSK LLHNIPVHKR LDAVVTVCYE AHARLRDPVH GCLAHLFALQ QQVVNLQAEV 120 SYFQAHLATL HLEVPPTPPG FCTANLPTTA SPPPIYDLSL LFDPMMQPPA ARQMDHHQLS 180 AGTGGAPPHQ GGGGDLHALA RELLQRQSTM ASETSPLPPH RRGNQRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	2e-62	LBD family protein