PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986462.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 194aa MW: 21285.5 Da PI: 8.9798

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986462.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122	3.3e-38	14	115	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+k+Cv+apyf ++q +++fa+vh++FGasn kll ++p+++r da+ sl+yeA r+rdPvyG+v+ i++lqqq+ +l+ae XP_024986462.1 14 PCGACKFLRRKCVKNCVFAPYFDSDQlgTSDFAAVHRVFGASNAAKLLLRIPPHRRLDAVVSLCYEALSRVRDPVYGCVANIFTLQQQVINLQAE 108 7*********************99666************************************************************** PP DUF260 94 lallkee 100 la+++++ XP_024986462.1 109 LAYVRAR 115 99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MSCRHGGGGG GGGPCGACKF LRRKCVKNCV FAPYFDSDQL GTSDFAAVHR VFGASNAAKL 60 LLRIPPHRRL DAVVSLCYEA LSRVRDPVYG CVANIFTLQQ QVINLQAELA YVRARISTLQ 120 CHRQANLPST DILSSPKIMS SSTMSPVYSE LAKSVQTSRV IPKCSNDTPT GQELEESDLE 180 MIAREFLTKY VPRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00210.1	2e-56	LBD family protein