PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024986469.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 375aa    MW: 42602.9 Da    PI: 9.1629
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024986469.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.49.2e-124681788
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                    ++pk f+++ ++   ++ +  +  + g++W vk+      ++ v+++GW+ Fv+ ng+++ Dfv Fk++g+ 
  XP_024986469.1  4 SIPKAFTKHLKSR--RNNKTAILKRGGQKWPVKI-----VDHWVFGEGWETFVRGNGVQDFDFVFFKHEGDL 68
                    8*****9555544..4456666778*********.....45579***********************98863 PP
2B360.13.8e-19160248498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +l  +++++++ l+lpk fa ++g+++    +++l++ e+  sW+v++  +++ g+ ++   GW+eF+ angL++gD++ F+l++ +++++v  +
  XP_024986469.1 160 TL--KSATSKHKLYLPKAFALSNGLING---EIILKNvENEGSWKVNM--TNYCGEvFYVHHGWREFCIANGLEQGDSFQFELIK-KGEKPVANI 246
                     55..56777788***********99943...6*****8888*******..888888899************************98.777788777 PP

                     E- CS
              B3  97 fr 98 
                      r
  XP_024986469.1 247 SR 248
                     65 PP
3B343.75.1e-14264353296
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     fk + ++++ k++++ +p +fa+++g++k++  +++++de+ r W  kl  + k++r+ ++ G +e+  angLkegD ++F+l++ ++ ++++ +
  XP_024986469.1 264 FKSTATPYSIKNSLVNIPSDFARSNGLDKRN-CEMIVMDEKRRLWPTKL--CCKDNRVRIK-GSREMQIANGLKEGDEFLFELVD-KGNKPLMNF 353
                     688899********************99866.59***************..7777787777.********************997.666666655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    
MLQSIPKAFT KHLKSRRNNK TAILKRGGQK WPVKIVDHWV FGEGWETFVR GNGVQDFDFV  60
FFKHEGDLVF DTIVFNASCC ERDYPSNKVT IIEAEKACPE AKSLRNCIID TSGSETGNKL  120
IRCHSEADGS NLIDISMKSL LKAEGTRIPD QNHHPCFIRT LKSATSKHKL YLPKAFALSN  180
GLINGEIILK NVENEGSWKV NMTNYCGEVF YVHHGWREFC IANGLEQGDS FQFELIKKGE  240
KPVANISRIS KKTPMVNAAH NPCFKSTATP YSIKNSLVNI PSDFARSNGL DKRNCEMIVM  300
DEKRRLWPTK LCCKDNRVRI KGSREMQIAN GLKEGDEFLF ELVDKGNKPL MNFHNNQHTP  360
EMGKKLELQF EKSAN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-40B3 family protein