PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024986481.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 495aa    MW: 55933 Da    PI: 5.0755
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024986481.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS262.71.3e-801224931374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetsekn.sseelaalklfsevsPilk 92 
                     lv++Ll+ +e   ++++ +a++l++  ++ ++ +g+p++Rl+ yf +AL+++++r ++   ++ l +++  + ++ s+++ a+  +f++  P+++
  XP_024986481.1 122 LVHTLLTSVEKTGQRQFDCATKLVELCNNVSTTEGNPVERLVYYFSKALHEKINReMGRVECDGLgNMQMFDLQEaSTSVEASIFAFHQRVPLPQ 216
                     6899***************************************************5555556666455555544523333334445********* PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +++++a ++I e v +++++H+iD++i +G+ +  Ll+aLas+  +   +++iT++g      + +++ +g++La+fAe+++++f+f++++  ++
  XP_024986481.1 217 VCQFIAIHMIIENVREATKIHVIDLQIRHGMIYTVLLKALASQCeSHIEHIKITAIGT---RAESKIKDIGKQLADFAESINLSFSFKMVMIADV 308
                     *****************************************99845667*********...5699****************************** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      d++++ L+++ +E++aV ++  l +l +++ +le     +++++++++P v v++e ea+h+s  F++rf+eal +y alfd ++  l++++++
  XP_024986481.1 309 LDFNINLLEIDDDETVAVYSSCFLSSLIAKPNHLEY----LMRVIRKINPCVTVITEVEANHTSLAFVKRFTEALFFYGALFDIMSYCLANDDRD 399
                     ****************************88888888....******************************************************* PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     r++ E +l g++i+n+va+eg+er+ rh  +  Wre   ++G+ +++l++    +akll+++++ +   ++  + g+l++ Wkd p++svSaW+
  XP_024986481.1 400 RKVSESVLYGQSIRNIVAAEGDERTIRHIGVDVWREFYARFGMLEIELNDASLFEAKLLISNFDcGSCCSIRVDGGCLLIDWKDVPIFSVSAWK 493
                     ****************************************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    
MFPSKKFDLA ADSDNPSSKL QINDQQEPFF SDFGDSDNCY VDFASPAFHV FVKNTKDSPF  60
PTRSRKLNAE KILVPTQNPD KKLSTNAIIR LACQRFVESC SSKNDQISCS ALSDDEVKDI  120
ELVHTLLTSV EKTGQRQFDC ATKLVELCNN VSTTEGNPVE RLVYYFSKAL HEKINREMGR  180
VECDGLGNMQ MFDLQEASTS VEASIFAFHQ RVPLPQVCQF IAIHMIIENV REATKIHVID  240
LQIRHGMIYT VLLKALASQC ESHIEHIKIT AIGTRAESKI KDIGKQLADF AESINLSFSF  300
KMVMIADVLD FNINLLEIDD DETVAVYSSC FLSSLIAKPN HLEYLMRVIR KINPCVTVIT  360
EVEANHTSLA FVKRFTEALF FYGALFDIMS YCLANDDRDR KVSESVLYGQ SIRNIVAAEG  420
DERTIRHIGV DVWREFYARF GMLEIELNDA SLFEAKLLIS NFDCGSCCSI RVDGGCLLID  480
WKDVPIFSVS AWKFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.16e-56GRAS family protein