PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986487.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 419aa MW: 46902.1 Da PI: 9.2659

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986487.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50	7.3e-16	86	145	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a+ k++g XP_024986487.1 86 SKFRGVSRHRWTGRYEAHLWDkGSWNAtqkKKgKQVYLGAYDEEESAARAYDLAAIKYWG 145 79*****************999988876447***********************98 PP
2	AP2	50.6	4.8e-16	188	239	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_024986487.1 188 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 239 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MDLIATKSEA SLRRRNSFSG GSDASSAVVK RRRRCPSMLA LNDHKSSGAK ENQLPAPTTP 60 LLDHSNGVVT TATTTPTTPT TVKRSSKFRG VSRHRWTGRY EAHLWDKGSW NATQKKKGKQ 120 VYLGAYDEEE SAARAYDLAA IKYWGTTTFT NFPVTDYEKE LEIMENTTKE EYLATLRRRS 180 SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY STQEEAAHAY DIAAIEYRGI 240 NAVTNFDLST YIRWLRSGSN SAAATSQSQD QTLPPAITAP HHVVEEPRFP FGSSSLQLGI 300 NNASQDQQLL DTKTLMADTD SSSSAPSALS LLLRSSMFKE LVEKNLNAGN DEEQETKVVM 360 KSEGNEFRGM FFNGMCPSKV GMELNEDEDE DEKNELPLFR NPNQSLWNGS RNINKSSRH

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MDLIATKSEA SLRRRNSFSG GSDASSAVVK RRRRCPSMLA LNDHKSSGAK ENQLPAPTTP  60
LLDHSNGVVT TATTTPTTPT TVKRSSKFRG VSRHRWTGRY EAHLWDKGSW NATQKKKGKQ  120
VYLGAYDEEE SAARAYDLAA IKYWGTTTFT NFPVTDYEKE LEIMENTTKE EYLATLRRRS  180
SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY STQEEAAHAY DIAAIEYRGI  240
NAVTNFDLST YIRWLRSGSN SAAATSQSQD QTLPPAITAP HHVVEEPRFP FGSSSLQLGI  300
NNASQDQQLL DTKTLMADTD SSSSAPSALS LLLRSSMFKE LVEKNLNAGN DEEQETKVVM  360
KSEGNEFRGM FFNGMCPSKV GMELNEDEDE DEKNELPLFR NPNQSLWNGS RNINKSSRH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	34	RRRNSFSGGSDASSAVVKRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	3e-81	AP2 family protein