PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986542.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 560aa MW: 63781.9 Da PI: 5.5944

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986542.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.9	6.9e-20	90	140	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ ng +r++lg+f+ta +Aaka+++a+ +++g XP_024986542.1 90 HYRGVRRRP-WGKYAAEIRDPKRNG--ARVWLGTFDTAIGAAKAYDKAAFEMRG 140 6******.******98776..***********************98 PP
2	AP2	60.8	3.1e-19	426	476	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ ng +r++lg+f+ a eAaka+++a+ +++g XP_024986542.1 426 HYRGVRRRP-WGKYAAEIRDPKRNG--ARVWLGTFDVAIEAAKAYDRAAFEMRG 476 6******.******98776..***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MSTFDEVSAL DFIRHHLLDD YEAPVLTSQT SVSGSDLSVS DYFVSEEECK TTSDFSIRFT 60 VPELIDSRSG KPYLDVDSKE TECVEEVNVH YRGVRRRPWG KYAAEIRDPK RNGARVWLGT 120 FDTAIGAAKA YDKAAFEMRG SKAILNFPQE IGNSSTITRS EVGRKRRRDV EEMVVMVKKE 180 WIMEKVDLPL TPSSWMAIWG EDWCGTHPLS PMSQLMVIGG DNKETIAEEA INKNKAKSCA 240 AKKREGEIKK SYRLQRRRWR PVEEADVEEA MWRRRCEEAV EAKMTKRRCE EADDDGRDEN 300 LTRNSAASPP HHLYIHLSLF LPLPSLSPFL FSFDFNLTMA AAFDEVSALY FIRRHLLDEN 360 ETPNCVGLTS HTSISASDLS VSDYLHSEEE TTSDFSIHFT VPESVDTISG KSYLEETYCV 420 EEVKVHYRGV RRRPWGKYAA EIRDPKRNGA RVWLGTFDVA IEAAKAYDRA AFEMRGSKAI 480 LNFPLEIGNS KAESSTTTTS EINGCLKRRR DVDEMVVMVK KERITENVDL PSTPSSWMAV 540 WDEDWRGAHP LSPMSRLMVI

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MSTFDEVSAL DFIRHHLLDD YEAPVLTSQT SVSGSDLSVS DYFVSEEECK TTSDFSIRFT  60
VPELIDSRSG KPYLDVDSKE TECVEEVNVH YRGVRRRPWG KYAAEIRDPK RNGARVWLGT  120
FDTAIGAAKA YDKAAFEMRG SKAILNFPQE IGNSSTITRS EVGRKRRRDV EEMVVMVKKE  180
WIMEKVDLPL TPSSWMAIWG EDWCGTHPLS PMSQLMVIGG DNKETIAEEA INKNKAKSCA  240
AKKREGEIKK SYRLQRRRWR PVEEADVEEA MWRRRCEEAV EAKMTKRRCE EADDDGRDEN  300
LTRNSAASPP HHLYIHLSLF LPLPSLSPFL FSFDFNLTMA AAFDEVSALY FIRRHLLDEN  360
ETPNCVGLTS HTSISASDLS VSDYLHSEEE TTSDFSIHFT VPESVDTISG KSYLEETYCV  420
EEVKVHYRGV RRRPWGKYAA EIRDPKRNGA RVWLGTFDVA IEAAKAYDRA AFEMRGSKAI  480
LNFPLEIGNS KAESSTTTTS EINGCLKRRR DVDEMVVMVK KERITENVDL PSTPSSWMAV  540
WDEDWRGAHP LSPMSRLMVI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	168	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51190.1	2e-33	ERF family protein