PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986556.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WOX

Protein Properties

Length: 201aa MW: 22490.2 Da PI: 8.0988

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986556.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.9	2.3e-20	45	106	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t+eq+++L +lF++ r+p++++++ ++++l +++ ++V++WFqN++a+e++ XP_024986556.1 45 KCGRWNPTNEQVKVLTDLFRSgLRTPTTDQIQNISSQLsfygKIESKNVFYWFQNHKARERQ 106 568***************99************************************97 PP
2	Wus_type_Homeobox	112.9	1.7e-36	45	108	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++ RW+Pt+eQ+k+L++l++sGlrtP++++iq+i+++L+ yGkie+kNVfyWFQN+kaRerqk+ XP_024986556.1 45 KCGRWNPTNEQVKVLTDLFRSGLRTPTTDQIQNISSQLSFYGKIESKNVFYWFQNHKARERQKR 108 578***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence
MDEGMSDFGL KLSPTKGGPP SPAPAPAPAP AGAGAGAGGA GAGAKCGRWN PTNEQVKVLT 60 DLFRSGLRTP TTDQIQNISS QLSFYGKIES KNVFYWFQNH KARERQKRRR VYVENLDQND 120 HHFNVSKQHF AEVLESGRVI ETLQLFPVNS LTFSDQPEKV RAYTNDECKE NASPFMYTCA 180 TEMENHYQHR HPSLDLRLSF M

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	111	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11260.1	6e-56	WOX family protein