PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986563.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 257aa MW: 29297.2 Da PI: 8.6011

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986563.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.5e-12	84	136	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r h e+ErrRR+++ + + Lr+llP ++ +++ s +e ++v+YIk+L+ XP_024986563.1 84 KRLEHREIERRRRQEMANLCSSLRSLLPLDF--IKGRRSTSEHMNQVVNYIKHLE 136 7999***********************75..******************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MFSSFEHSRE VSFQIPSTTQ QQQDHHNRLT SVTALRRLPT GPFDDHKLVP SQQKPGRKRS 60 CNNLQQQDHH LVVDCDDENE KKKKRLEHRE IERRRRQEMA NLCSSLRSLL PLDFIKGRRS 120 TSEHMNQVVN YIKHLEENIK GLETTRDELK KTCPHVTDSS SVLPNKNIEN ETSGRHGPNT 180 VTVGCSHGGV EILIKSCTGF PISRVVKALV QEGLNVISCN STKVNERFIH SIHSEVSDEI 240 CIQVSILQKK LVELVLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	96	KKKKRLEHREIERRRR
2	82	97	KKKKRLEHREIERRRR
3	83	98	KKKKRLEHREIERRRR
4	85	96	RLEHREIERRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	1e-29	bHLH family protein