PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024986594.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family YABBY
Protein Properties Length: 161aa    MW: 18106.2 Da    PI: 9.9237
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024986594.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY141.21.2e-434012385170
           YABBY  85 nvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     n  ++++  ++vs+   s+   +++p++p ++rPPekrqrvPsaynrfikeeiqrika nPdishreafsaaaknWahfP+ihfgl
  XP_024986594.1  40 NFLMNQNYANDVSV--TSRGGFNDLPKPPVINRPPEKRQRVPSAYNRFIKEEIQRIKARNPDISHREAFSAAAKNWAHFPHIHFGL 123
                     34444444444444..36778899***999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    
MRGLMLPSSP AVNQFHFGHS FFNPSTHGLQ DDQIPNGSSN FLMNQNYAND VSVTSRGGFN  60
DLPKPPVINR PPEKRQRVPS AYNRFIKEEI QRIKARNPDI SHREAFSAAA KNWAHFPHIH  120
FGLMADQTTA VDKNSMRQQE TEGGFMKESF FASANVGVSP Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-50YABBY family protein