PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024986668.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C2H2
Protein Properties Length: 326aa    MW: 36034.4 Da    PI: 6.731
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024986668.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00076130152123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_024986668.1 130 YECKTCNRTFPSFQALGGHRASH 152
                     99**********99999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MEMEFMAEFT QGMSRDRARQ IIRGKRTKRQ RPCSPFGMSS STSGNSNADG DCLIDNYTPE  60
ADHSPVMSSE MSTEEDQDMA NCLIMLAQSV SPVKEEKSDQ IRQKTEKLSS RRFTEMTTTT  120
VGGKTGFYVY ECKTCNRTFP SFQALGGHRA SHKKPKLNVE EKKSGSVNIP PPLMEYSEED  180
QHKVVVEDEE NKASMIISNN VQKSPSPSSG FIQTGIIHNN TKGKVHECSI CGSEFLSGQA  240
LGGHMRKHRP TPPSINRVGI SMQTDDSTTD HIIEKSPGGS SSMLSLDLNL PPPDVVDDVQ  300
SKFQFTSKSS QQHLVFSAPA LVDCHY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.18e-47C2H2 family protein