PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024986673.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C2H2
Protein Properties Length: 293aa    MW: 32741.8 Da    PI: 4.9867
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024986673.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024102124123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  XP_024986673.1 102 FSCNYCQRKFYSSQALGGHQNAH 124
                     89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MEISYDQEHQ LLSSSDPVVL PDAEFQRPKE AEDQEEEEER DDDQEEEEER KIETCGDLQM  60
DGHDDESRFN QELNLIDSLN MMGNSSESTT PQESDTTEPR VFSCNYCQRK FYSSQALGGH  120
QNAHKRERNL AKRGQRMGFL SSPMISAAAA FGHTYMHQQQ HHDQNYCSSL SSIPLHGGYN  180
SSRSLGIQVH SMIHKPSSMF STSSSSGFKS FYGPKGWSSR PHVDQQPAIG KLTLASYTSS  240
LAAAPPSHGG VGRFEVVRTG MSSTGKDEVG GLWWPELKTN QDESQKLDLS LKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.16e-42C2H2 family protein