PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986700.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

GRF

Protein Properties

Length: 160aa MW: 17643.1 Da PI: 8.6179

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986700.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.7	1e-23	101	145	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 +aepgrC+RtDGKkWRC ++v+ g+k+CErHlhrgrsrsrk +e+ XP_024986700.1 101 EAEPGRCKRTDGKKWRCGKEVVIGHKYCERHLHRGRSRSRKDVEA 145 58***************************************9986 PP
2	QLQ	48.1	3.5e-17	43	77	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT +Q ++Lk Q+l+yKy a++PvP++L+++i++ XP_024986700.1 43 FTFMQMEELKLQALIYKYVEAGLPVPSHLILPIWN 77 9*********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence
MEAVVGLVMN GVEGSASSTD SSSFLLQNSN YMSVISRNGG LGFTFMQMEE LKLQALIYKY 60 VEAGLPVPSH LILPIWNSVL TSLSGSGCDR SLYDNYKNSM EAEPGRCKRT DGKKWRCGKE 120 VVIGHKYCER HLHRGRSRSR KDVEADAIAA TAIDASHKNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	1e-33	GRF family protein