PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024986716.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 307aa    MW: 32992.6 Da    PI: 9.0073
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024986716.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.2e-11242287655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  XP_024986716.1 242 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 287
                     689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MYPNSNSSSG SQRDPNHAIN GSSNTTGGGG LGLARYRSAP VSLTTTVDSV IDAQGQNTVG  60
NHMVAGGGTP TRYFSPTDTT SSQLSSSVST RDRLQTTSFR LNEFASAFNG LKGNTTTQTT  120
PSPLFRHGSS PAGFLNTLTS STPTDGRGSR LSSQLSFTGN SFSQISEESD IANSLMFSSS  180
SSHNKRTKMD MNGLNIMESE LNFGLSESAL EAAAMEKMMD LPHDSVACKI RAKRGCATHP  240
RSIAERERRT RISGKLKKLQ DLVPNMDKQT SYADMLDLAV QHIKGLQTHV QNLNHELENC  300
SCGCKPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.18e-52bHLH family protein