PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024986738.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C2H2
Protein Properties Length: 326aa    MW: 37879.9 Da    PI: 8.5364
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024986738.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-05163182120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C+ksF+r  n++ H+
  XP_024986738.1 163 FVCSLCNKSFNRYNNMQMHM 182
                     89*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MCFEAPPFFE WLKPSPPPSS SSSSSSSSSY DTMMFSKLHH HHNQEQDFPH KTIQCLPLLS  60
QLLGEDEKDR VLKIKEEDYN LQKVTVALHI GLPSYGTEIA RDSMITNKFF DEFKEEKDDQ  120
KNSDMKVQFN ITNNDGYTVN NNHDQTRFWI PTQSQILVGP MQFVCSLCNK SFNRYNNMQM  180
HMWGHGSEYR KGPESLKGTQ PAAMLRLPCY CCAPGCKNNI NHPRAKPLKD FRTLQTHYKR  240
KHGAKPFTCR KFCTKRFAVK GDWRTHEKNC GKLWYCNCGS DFKHKRSLKD HIRSFGSGHS  300
PKPAWLERFD HDEKECITGS EDEIMH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-112C2H2 family protein