PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986753.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WOX

Protein Properties

Length: 349aa MW: 40163.9 Da PI: 7.5795

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986753.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.4	4.4e-22	62	121	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psa+e+++++++l +++ ++V++WFqN++a+e++ XP_024986753.1 62 SRWNPTPEQLQTLEELYRRgTRTPSADEIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 121 7***************99************************************97 PP
2	Wus_type_Homeobox	115.9	1.9e-37	61	123	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP+++eiq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ XP_024986753.1 61 SSRWNPTPEQLQTLEELYRRGTRTPSADEIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 123 79***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MWMMGYNEAD DLNTCNNGAR KLRPLVPRPP PPPTVFHSTP HLLAAEQNKR DFNSQQMVVV 60 SSRWNPTPEQ LQTLEELYRR GTRTPSADEI QHITAQLRRY GKIEGKNVFY WFQNHKARER 120 QKRRRQLDNS MNDHHQAPFY TTDISTINLD QSIQLKDTEV NRTCYEVEET RNWAIPTFSE 180 KSVLRERTAK AESRMTSVAA DHHGWIPVEQ EEAATDDLLH LHPRRKTFPQ RNATWNHMMQ 240 FLSSPPPPPP PPTNHIPPFN SATVCTLAAV TTSTPSASDT SSTLVVSPPH SHRYHHHHLP 300 DDMHSYQTLE LFPVNTNGQG PEHTDKCFLP TNDVSLGPRQ FIEFLPLKN

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MWMMGYNEAD DLNTCNNGAR KLRPLVPRPP PPPTVFHSTP HLLAAEQNKR DFNSQQMVVV  60
SSRWNPTPEQ LQTLEELYRR GTRTPSADEI QHITAQLRRY GKIEGKNVFY WFQNHKARER  120
QKRRRQLDNS MNDHHQAPFY TTDISTINLD QSIQLKDTEV NRTCYEVEET RNWAIPTFSE  180
KSVLRERTAK AESRMTSVAA DHHGWIPVEQ EEAATDDLLH LHPRRKTFPQ RNATWNHMMQ  240
FLSSPPPPPP PPTNHIPPFN SATVCTLAAV TTSTPSASDT SSTLVVSPPH SHRYHHHHLP  300
DDMHSYQTLE LFPVNTNGQG PEHTDKCFLP TNDVSLGPRQ FIEFLPLKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	1e-44	WOX family protein