PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986778.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Dof

Protein Properties

Length: 372aa MW: 40772.9 Da PI: 6.9736

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986778.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.5	4e-40	42	102	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCds+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rknk+ss XP_024986778.1 42 PEEALKCPRCDSSNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSS 102 6899******************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MEVEMDVSGV HHHHHQQDMS SQTLESMLAC NKAQQDKKPR PPEEALKCPR CDSSNTKFCY 60 YNNYSLTQPR YFCKSCRRYW TKGGTLRNVP VGGGCRKNKR SSTLSSATSS NSSSSSALPK 120 IRGPQDHHLI QQHHQQQHPL NIMTSNSNNH LLAGLAHLPY DSTCTDLSLA FARLQSQGNG 180 HLGYDHFDHS DHHLGNNDPN SNHPLTPQGN HLGFLDAIRG GFLENSTPNG FHNNMLYNGG 240 NIGNGNLMGL NNGSSSNHDE DQEIMNHQMF DDHQEVPLMN NGNSSCGAAT TAVTMTTVKQ 300 ETCNMMRSSD QLGMGENRPG VLWGFPWQMG AGGGGDQGNM IHEVESGGRS QLGGWNGIGS 360 TTWHGLINSP LM

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MEVEMDVSGV HHHHHQQDMS SQTLESMLAC NKAQQDKKPR PPEEALKCPR CDSSNTKFCY  60
YNNYSLTQPR YFCKSCRRYW TKGGTLRNVP VGGGCRKNKR SSTLSSATSS NSSSSSALPK  120
IRGPQDHHLI QQHHQQQHPL NIMTSNSNNH LLAGLAHLPY DSTCTDLSLA FARLQSQGNG  180
HLGYDHFDHS DHHLGNNDPN SNHPLTPQGN HLGFLDAIRG GFLENSTPNG FHNNMLYNGG  240
NIGNGNLMGL NNGSSSNHDE DQEIMNHQMF DDHQEVPLMN NGNSSCGAAT TAVTMTTVKQ  300
ETCNMMRSSD QLGMGENRPG VLWGFPWQMG AGGGGDQGNM IHEVESGGRS QLGGWNGIGS  360
TTWHGLINSP LM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	3e-39	Dof family protein