PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024986931.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YB
Protein Properties Length: 139aa    MW: 15745.5 Da    PI: 4.5611
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024986931.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB168.67.3e-5317112297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     ++q+r+lPianv+rimk++lP+nakisk+aket+qec+sefisfvt+eas+kc++e+rkt+ngdd++wa++tlGf+dy+ plk yl +yre+e +
  XP_024986931.1  17 NQQERLLPIANVGRIMKQILPQNAKISKEAKETMQECASEFISFVTGEASEKCKKERRKTVNGDDVCWAMGTLGFDDYAPPLKRYLDRYREVEDD 111
                     579******************************************************************************************98 PP

           NF-YB  97 k 97 
                     +
  XP_024986931.1 112 R 112
                     6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    
MDDSTTRFTT GEDETANQQE RLLPIANVGR IMKQILPQNA KISKEAKETM QECASEFISF  60
VTGEASEKCK KERRKTVNGD DVCWAMGTLG FDDYAPPLKR YLDRYREVED DRLATPQRNE  120
EEGQPSSSAA EFSSIPKPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-55NF-YB family protein