PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024986952.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YA
Protein Properties Length: 322aa    MW: 34932.6 Da    PI: 9.7921
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024986952.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA92.26.6e-29155211158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++I++RR +Rak+e  kk+ +ksrkp+lh SRh hA+rRpRg+gGrF
  XP_024986952.1 155 DGPIYVNAKQYHGIIRRRRSRAKAEMAKKV-SKSRKPFLHLSRHLHAKRRPRGCGGRF 211
                     57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MNSVYYKEHY DGIASNPVGS LSSGSGPWWS GLVTRPTYEE SMVRMKPSSM EDIGEQLMPI  60
ISPKPMAKGN MTHFNIFSGE CKSSSNGQKP VQIQAAFSMQ YAPQEYGGHL ELGFGPPPVI  120
CGKNPYGGQY YGVLSGFGPQ STGRVMLPLN LSSDDGPIYV NAKQYHGIIR RRRSRAKAEM  180
AKKVSKSRKP FLHLSRHLHA KRRPRGCGGR FLNTKEMDKG KSGNPDSKTE HPTGSQRSEV  240
LQCDLGNSTS PHETNAGRSH ISGSEVTSMF SMGDLNHFPI GNLSVVSLSD MMMSGNGIHA  300
FGMHNKWAAA TTGGGNCCNL AV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.31e-47NF-YA family protein