PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986954.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 411aa MW: 43805.2 Da PI: 6.6008

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986954.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	2e-06	361	383	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C ++ t C++G++C F H+ XP_024986954.1 361 KPCIYYNSTRGCRHGANCVFQHD 383 69********************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MRGLQKSKRV SWASDLNLCQ VKLFLSDESP SQVGLGGQDH LQAKASWPWH SAGAGSDDNL 60 PPGFEGIQPA NLLQNKLSQV PLIQWKCPSR FVLDPNWQVA AGEESKELEV ESQREMRVLE 120 AVYPRPSAIP PNPASAMGAD EPYYNDQHTP LIPITPIEDE DMAPDSSSIA ANTSLQAPAT 180 MATQSGNGGM VSGVEPDVVS AAYSALNAAM SNGSQGSLID PNLLIKILSN PTLIEKLVSS 240 TQGPSASGPQ ISQALSMPTL PAISVAEPPP PPPPVHGRTT HLPFSTASSS SSNAHYPPAS 300 RVGPVPVPVP ASNLAPPEVN PAKKDINYYK SLIQQHGGEK AESVNSNNVK TRGDTKGKIM 360 KPCIYYNSTR GCRHGANCVF QHDSSSSQQQ QRVSLPDSKR MKMDSREISG T

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MRGLQKSKRV SWASDLNLCQ VKLFLSDESP SQVGLGGQDH LQAKASWPWH SAGAGSDDNL  60
PPGFEGIQPA NLLQNKLSQV PLIQWKCPSR FVLDPNWQVA AGEESKELEV ESQREMRVLE  120
AVYPRPSAIP PNPASAMGAD EPYYNDQHTP LIPITPIEDE DMAPDSSSIA ANTSLQAPAT  180
MATQSGNGGM VSGVEPDVVS AAYSALNAAM SNGSQGSLID PNLLIKILSN PTLIEKLVSS  240
TQGPSASGPQ ISQALSMPTL PAISVAEPPP PPPPVHGRTT HLPFSTASSS SSNAHYPPAS  300
RVGPVPVPVP ASNLAPPEVN PAKKDINYYK SLIQQHGGEK AESVNSNNVK TRGDTKGKIM  360
KPCIYYNSTR GCRHGANCVF QHDSSSSQQQ QRVSLPDSKR MKMDSREISG T