PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024986962.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 361aa MW: 40506.1 Da PI: 9.171

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024986962.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.4e-32	184	237	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_024986962.1 184 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 237 9****************************************************7 PP
2	Myb_DNA-binding	48.6	1.8e-15	185	236	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWTt ++ ++v+av++lGg+ t+k++ + m k +tl ++ks++q+y+ XP_024986962.1 185 RMRWTTTLHARFVHAVELLGGHeraTPKSVLELMDvKDLTLAHVKSHLQMYR 236 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MELFPAQPDL SLQISPPNTK PTSTTWRTSS STTDEDQHDL DLGNIWKRAF NSQQQHSSTK 60 RPEPSFGLNL PHPTHSTNPD LTHLHHLLSH QNTNTANLTH QNHHLGFRSE LGFLRPIRGV 120 PVYHHNPSCP PNLTVLSHNQ HQPLIDYSCT TAPTSSSSLI HANNIVQSRF LSARFSSKRS 180 MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTIKT 240 TDKAPASSGQ SDVHENGSSG DTSDDILFDI QNLKRTDSSV EHGGRAEVHP IKDHRHAFWS 300 NSSSREAWLH GKHKDSQVNM PSLKKETNSS IGVNYEGLLE VNSRSLCPTK PNLEFTLGRP 360 Q

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MELFPAQPDL SLQISPPNTK PTSTTWRTSS STTDEDQHDL DLGNIWKRAF NSQQQHSSTK  60
RPEPSFGLNL PHPTHSTNPD LTHLHHLLSH QNTNTANLTH QNHHLGFRSE LGFLRPIRGV  120
PVYHHNPSCP PNLTVLSHNQ HQPLIDYSCT TAPTSSSSLI HANNIVQSRF LSARFSSKRS  180
MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTIKT  240
TDKAPASSGQ SDVHENGSSG DTSDDILFDI QNLKRTDSSV EHGGRAEVHP IKDHRHAFWS  300
NSSSREAWLH GKHKDSQVNM PSLKKETNSS IGVNYEGLLE VNSRSLCPTK PNLEFTLGRP  360
Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	9e-64	G2-like family protein