PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987005.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 723aa    MW: 79766.1 Da    PI: 6.6897
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987005.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS301.91.6e-923637223374
            GRAS   3 elLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     ++L+++Ae + sg+++ aq++Larl+++  ++p+  +p+q++a+yf+eAL +++a+    ++++ p + +++ n   ++ a+k+fsevsPi++f 
  XP_024987005.1 363 DQLFAAAELMLSGNFSHAQQILARLNHQfsSAPAPnKPFQKAAFYFKEALLTQMAS---LMSDSNPNRIAPSFNGMFKIGAYKMFSEVSPIIQFM 454
                     79**************************754444468******************9...677777888888889********************* PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                     ++t Nq++lea+  ++ +HiiDfdi+ G+QW++++q+L +++    +g  sl+iT+++sp++++  el  ++e+L++fA+e+g++f+ +v+   +
  XP_024987005.1 455 NFTSNQTLLEALGDAKNIHIIDFDIGFGAQWASFIQELPTKKnnngGGGCSLKITAFASPSTHHPIELGLMHENLSQFAQETGISFQLEVV---N 546
                     ***************************************88867766678****************************************8...9 PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres 279
                     ++++++++++++ +Ea+aVn+ +   +++     l s+++++L+++k+lsP++vv  ++ +++++ sF + +l+ l+yy +l+ds+  a++    
  XP_024987005.1 547 FDSFDPRSFSISGQEAIAVNFPIWSASTH-----L-SAIPSILHFIKQLSPRIVVSLDRGCERTDLSFPQYLLQGLQYYEVLLDSIdGANV--VP 633
                     **********************9777776.....3.33678*********************************************55554..45 PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     e  +k+E++l++++i+ +v+ + +      e++ +W++ +++ GF+pv+   +a++qa++++++++ +g+++e+++++lvl+W++r+L++vSaW+
  XP_024987005.1 634 EVSNKIEKFLFQPQIERMVMGKLQF----PERMPHWKSLFTAGGFSPVST--SAEAQADCIVKRMQIQGFHIEKRQAALVLCWQNRELMTVSAWK 722
                     8889****************99887....999**************9865..5788**************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    
MRGMAFEVAA FQPSTESVKC KEGSFGSNAT NEPISVLDTR RSPSPSTSTS TLSSSFGGGN  60
DCTTTTTTTL LAVSDNNNNN LQQKWPDSVP QEMRVSGCLA NLGVSADGGR KDEWSELQPI  120
PAEFELQQQR FGVGLEDWES LLSESAASPA QYQSLRWISG DFDDTSLSLQ QLLQSNQFHE  180
NAPPTTVSET PAPPYFNSQN YFPFSNPDQN PQVFNPQMIL NTPPQSQPPP PPPQIQFHHQ  240
GLQKAPNSVQ GLHKAPVFPQ GLHKAPVFIQ GLQKAPSFHG SLHKSPASGL GLQKAPIPNQ  300
GLQKVPVLNQ GHELQLKKQN QQQSFLQQKP LMVAGGTQQE PQQTAPPPSP VHHHHHQNQL  360
ICDQLFAAAE LMLSGNFSHA QQILARLNHQ FSSAPAPNKP FQKAAFYFKE ALLTQMASLM  420
SDSNPNRIAP SFNGMFKIGA YKMFSEVSPI IQFMNFTSNQ TLLEALGDAK NIHIIDFDIG  480
FGAQWASFIQ ELPTKKNNNG GGGCSLKITA FASPSTHHPI ELGLMHENLS QFAQETGISF  540
QLEVVNFDSF DPRSFSISGQ EAIAVNFPIW SASTHLSAIP SILHFIKQLS PRIVVSLDRG  600
CERTDLSFPQ YLLQGLQYYE VLLDSIDGAN VVPEVSNKIE KFLFQPQIER MVMGKLQFPE  660
RMPHWKSLFT AGGFSPVSTS AEAQADCIVK RMQIQGFHIE KRQAALVLCW QNRELMTVSA  720
WKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-98GRAS family protein