PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987010.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 536aa MW: 59030.8 Da PI: 8.9968

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987010.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	82	102	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H XP_024987010.1 82 CEICNKGFQRDQNLQLHRRGH 102 *******************88 PP
2	zf-C2H2	12.3	0.0005	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + XP_024987010.1 157 WKCEKCSKRYAVQSDWKAHSKIC 179 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence
MSNLTSASNE ASLSSSSNKN EVGTMYPPPQ QMQQSFASVP INSNNQTQTN KKKRNLPGNP 60 DPEAEVVAMS PKSLMATNRF LCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RSKQEVVRKK 120 VYVCPEPSCV HHEPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS DWKAHSKICG 180 TREHRCDCGT LFSRRDSFIT HRAFCGALAG ENARSSSSSL LSPNHLPLHL PINYPLKSEP 240 HLFQRPQVLN SNIITNTLQN HQLPSWFVHH HQENPSPNNN NNNNNLHLPS PSSPPHMSAT 300 ALLQKAAQMG VTMSKPAAST NTAIVMSQQQ QQQHQSIPNG PHQNDHMCAS TLLTAHHHDS 360 GLENLSCSDD DHHAMLGLKG GFANVSMAGC LDQIGATTMH AHSQMLHTNS LACTSVGSTA 420 LQEAFNGMLN STKGIHNTGF QEAFFRQASE ASLNPTKGGG GGGRGGGGGG NDELTRDFLG 480 LTGFPPPTAD HHHHLLNMAG LDPLNTSPYH HHQQQQQQQQ QQHNLNQNQN QLPWNG

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence

MSNLTSASNE ASLSSSSNKN EVGTMYPPPQ QMQQSFASVP INSNNQTQTN KKKRNLPGNP  60
DPEAEVVAMS PKSLMATNRF LCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RSKQEVVRKK  120
VYVCPEPSCV HHEPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS DWKAHSKICG  180
TREHRCDCGT LFSRRDSFIT HRAFCGALAG ENARSSSSSL LSPNHLPLHL PINYPLKSEP  240
HLFQRPQVLN SNIITNTLQN HQLPSWFVHH HQENPSPNNN NNNNNLHLPS PSSPPHMSAT  300
ALLQKAAQMG VTMSKPAAST NTAIVMSQQQ QQQHQSIPNG PHQNDHMCAS TLLTAHHHDS  360
GLENLSCSDD DHHAMLGLKG GFANVSMAGC LDQIGATTMH AHSQMLHTNS LACTSVGSTA  420
LQEAFNGMLN STKGIHNTGF QEAFFRQASE ASLNPTKGGG GGGRGGGGGG NDELTRDFLG  480
LTGFPPPTAD HHHHLLNMAG LDPLNTSPYH HHQQQQQQQQ QQHNLNQNQN QLPWNG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	120	KLKQRSKQEVVRKK
2	109	122	KLKQRSKQEVVRKK
3	460	470	GGGGRGGGGGG
4	461	471	GGGGRGGGGGG
5	462	472	GGGGRGGGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-104	C2H2 family protein