PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987012.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 555aa MW: 61498.1 Da PI: 6.4722

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987012.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41.5	3.4e-13	172	231	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+ a+a++ a++k++g XP_024987012.1 172 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKXARAYDMAALKYWG 231 57*****************666664477446***********************98 PP
2	AP2	47.1	6.1e-15	276	325	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_024987012.1 276 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 325 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MNSNNWLSFP LSPTHSSLPP HLNTSQSHNF SLGLVHDNMD TPFPNQEWNL IGEQGNNDHV 60 PKVADFLGVS KSENSSDLVA YNDIQGNDTD YLFTSSSLLP QVQNTLSATP TSYELPENAS 120 TLQSLTLSMG SGKRSTCETS TGENSSNDNN NSTSVVEANP RRTLDTFGQR TSIYRGVTRH 180 RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG GYDKEEKXAR AYDMAALKYW GTSTTTNFPI 240 TNYEKELEDM KHMTRQEFVA SIRRKSSGFS RGASMYRGVT RHHQHGRWQA RIGRVAGNKD 300 LYLGTFSTEE EAAEAYDIAA IKFRGLSAVT NFDMSRYDVK SILESNTLPI GGGAAKRLKE 360 AQAIESSRKR EEMIALGSGF PFGTSATAGG VLQAYPLLQQ PFETQSPQPL LTLQNPEISH 420 YSTQDPHFHQ NYLQTHHHHP YNMHSPHQST SQTPQFYNSY LQNNPVLLHG LMNMGVGGSS 480 SSVMDATNNN GGSSSGSYSN GGYLGNFLGQ SGSTAEELAM VKVDYDNLPT ENYAGWSGDS 540 SVQESNPSVF TMWND

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MNSNNWLSFP LSPTHSSLPP HLNTSQSHNF SLGLVHDNMD TPFPNQEWNL IGEQGNNDHV  60
PKVADFLGVS KSENSSDLVA YNDIQGNDTD YLFTSSSLLP QVQNTLSATP TSYELPENAS  120
TLQSLTLSMG SGKRSTCETS TGENSSNDNN NSTSVVEANP RRTLDTFGQR TSIYRGVTRH  180
RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG GYDKEEKXAR AYDMAALKYW GTSTTTNFPI  240
TNYEKELEDM KHMTRQEFVA SIRRKSSGFS RGASMYRGVT RHHQHGRWQA RIGRVAGNKD  300
LYLGTFSTEE EAAEAYDIAA IKFRGLSAVT NFDMSRYDVK SILESNTLPI GGGAAKRLKE  360
AQAIESSRKR EEMIALGSGF PFGTSATAGG VLQAYPLLQQ PFETQSPQPL LTLQNPEISH  420
YSTQDPHFHQ NYLQTHHHHP YNMHSPHQST SQTPQFYNSY LQNNPVLLHG LMNMGVGGSS  480
SSVMDATNNN GGSSSGSYSN GGYLGNFLGQ SGSTAEELAM VKVDYDNLPT ENYAGWSGDS  540
SVQESNPSVF TMWND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	0.0	AP2 family protein