PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987017.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 249aa    MW: 28170.7 Da    PI: 9.8517
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987017.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1225.5e-38181465128
             NAM   5 frFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     +rF Pt+eelv++yL +k++g++ ++l++vi+ v +y++ P +Lpk     ++ ++++w+fF++r++++a+g r++r+t+s yWkatg+   v+s
  XP_024987017.1  18 LRFYPTEEELVSFYLFNKLQGQRtHDLHRVIPVVPVYDHSPCHLPKlageLCRRDTEQWFFFVPRQEREAQGGRPSRTTASXYWKATGSPAYVYS 112
                     79*******************996677788***************656653444677************************************** PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++++++g+kkt+vfy+g++++ ++t+W m+eyr+
  XP_024987017.1 113 SDNKVIGVKKTMVFYEGKSRTVKRTEWKMNEYRA 146
                     ********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MESKLKTPTT MANPPSILRF YPTEEELVSF YLFNKLQGQR THDLHRVIPV VPVYDHSPCH  60
LPKLAGELCR RDTEQWFFFV PRQEREAQGG RPSRTTASXY WKATGSPAYV YSSDNKVIGV  120
KKTMVFYEGK SRTVKRTEWK MNEYRAIKKD VDNTNTSSVP KLRHELSLCR VYVVSGCTRA  180
FDRRPLGLEP TPMVTSKASQ GAPSSQNAVQ TYKTASPSNC SSPGSSNRMV DTVGNVGLVP  240
EWEWQHLTG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-84NAC family protein