PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987030.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 164aa    MW: 18105.7 Da    PI: 9.882
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987030.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-192573355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++GVr+++ +g+WvAeIr p++   r+r++lg+f taeeAa a++ a+  l+g
  XP_024987030.1 25 FRGVRQRH-WGKWVAEIRLPRN---RRRVWLGTFETAEEAAVAYDTAAYLLRG 73
                    8******9.**********955...5**********************99887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MKYTGKRVRN TTFEQNRICS PTKLFRGVRQ RHWGKWVAEI RLPRNRRRVW LGTFETAEEA  60
AVAYDTAAYL LRGDCAHLNF PNLKNQLKAN SINGNTAALL ESKLQAISLG MLNTKTNDSD  120
TSMVGGGLAA VAGVPPDSGE GVQLSKIPSL DMDMIWDALL VSDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.13e-42ERF family protein