PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987081.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 310aa    MW: 32274.4 Da    PI: 9.9224
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987081.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.2e-08104129227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     k +lC+ +     C++Gd+C+FaHg+
  XP_024987081.1 104 KSRLCNKYNTAEGCRFGDKCHFAHGE 129
                     679*********************96 PP
2zf-CCCH35.61.5e-11277301126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC +fa+ G C +G+rC+FaHg
  XP_024987081.1 277 FKTKLCENFAK-GSCTFGERCHFAHG 301
                     69*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MEFGVARKRG RPSAGLNGNS GFKKSKQDME SFQSGLGSKS KPCTKFFSTS GCPFGEGCHF  60
LHYVPGGLKA VTQMTGGNPA LPPTIRNPVV PPSFPDGSSP PAVKSRLCNK YNTAEGCRFG  120
DKCHFAHGEW ELGKPTVPSH HEDPRAMGPA PGSRFGGGGA RMDLNPAANN VAAASFGASA  180
TAKISVNASL AGAIIGKSGV NSKQICRLTG AKLSIRDHES DPNLRNIELE GTFDQIKQAS  240
QMVRELIVNI SSASGPPPPQ KSFGKPGGGS GGPAGNFKTK LCENFAKGSC TFGERCHFAH  300
GAEELRSSGA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-45C3H family protein