PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987102.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family LBD
Protein Properties Length: 228aa    MW: 24985.4 Da    PI: 7.9933
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987102.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.66.4e-312103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl++eA  r+ +Pv+Gavg++++++++++q+
  XP_024987102.1   2 SCNGCRVLRKGCSDNCILRPCLqwidtPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPSLFQSLLFEAAGRTVNPVNGAVGLLWTGNWHVCQA 96 
                     6********************************************************************************************** PP

          DUF260  91 kaelall 97 
                     +++++l+
  XP_024987102.1  97 SVDTVLR 103
                     9998765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MSCNGCRVLR KGCSDNCILR PCLQWIDTPE AQGHATVFVA KFFGRAGLMS FISAVPENQR  60
PSLFQSLLFE AAGRTVNPVN GAVGLLWTGN WHVCQASVDT VLRGGTLRPI PELNDGFPTM  120
PKLGDSFQTD ATFPDILKLQ DPVTHPRSKV QRRRRACEPP SNMTQSQDLD LNLNQSFPAV  180
KGSPEKRRQG SPSMNSEDSV TTTCLDGGFG EYSYIQGGGE VHLLNLFK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.13e-80LBD family protein