PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987132.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YA
Protein Properties Length: 286aa    MW: 31511.5 Da    PI: 6.7449
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987132.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.15.1e-32131187158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR R+sgGrF
  XP_024987132.1 131 QEPVYVNAKQYHAILRRRQSRAKAELEKKL-IKDRKPYLHESRHQHAMRRVRSSGGRF 187
                     69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MSSTAMQANS ADSSSPEQSL DRDSQSDEVL SEEEDDVSKE THDVPYFPSD SYGQGQQNFQ  60
HGAPNILPRN EETVAQAPQP ELVGHSVACA SNPYYDPYYG GMMAAYSQHL VHPQFLDMHQ  120
VRMPLPLEMA QEPVYVNAKQ YHAILRRRQS RAKAELEKKL IKDRKPYLHE SRHQHAMRRV  180
RSSGGRFAKK TETNASEDKK ATGSGASGMK RMQSGQSGES FSETRGGVVN SCNGRTYAVD  240
GGGRYDNQDG FQGSSYHSDI GEGGSLGQQW ATMPANQGSQ RAVAMK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.12e-58NF-YA family protein