PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987133.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YA
Protein Properties Length: 262aa    MW: 29007.5 Da    PI: 9.5976
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987133.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.34.4e-32107163158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR R+sgGrF
  XP_024987133.1 107 QEPVYVNAKQYHAILRRRQSRAKAELEKKL-IKDRKPYLHESRHQHAMRRVRSSGGRF 163
                     69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MARLRGVMSD ILSTPVLYPY ICYISDSYGQ GQQNFQHGAP NILPRNEETV AQAPQPELVG  60
HSVACASNPY YDPYYGGMMA AYSQHLVHPQ FLDMHQVRMP LPLEMAQEPV YVNAKQYHAI  120
LRRRQSRAKA ELEKKLIKDR KPYLHESRHQ HAMRRVRSSG GRFAKKTETN ASEDKKATGS  180
GASGMKRMQS GQSGESFSET RGGVVNSCNG RTYAVDGGGR YDNQDGFQGS SYHSDIGEGG  240
SLGQQWATMP ANQGSQRAVA MK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.12e-58NF-YA family protein