PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987134.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YA
Protein Properties Length: 257aa    MW: 28492.8 Da    PI: 9.4724
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987134.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.44.3e-32102158158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR R+sgGrF
  XP_024987134.1 102 QEPVYVNAKQYHAILRRRQSRAKAELEKKL-IKDRKPYLHESRHQHAMRRVRSSGGRF 158
                     69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MLRSDILSTP VLYPYICYIS DSYGQGQQNF QHGAPNILPR NEETVAQAPQ PELVGHSVAC  60
ASNPYYDPYY GGMMAAYSQH LVHPQFLDMH QVRMPLPLEM AQEPVYVNAK QYHAILRRRQ  120
SRAKAELEKK LIKDRKPYLH ESRHQHAMRR VRSSGGRFAK KTETNASEDK KATGSGASGM  180
KRMQSGQSGE SFSETRGGVV NSCNGRTYAV DGGGRYDNQD GFQGSSYHSD IGEGGSLGQQ  240
WATMPANQGS QRAVAMK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.12e-58NF-YA family protein