PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987141.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 659aa    MW: 73509.6 Da    PI: 6.0811
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987141.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS396.43.1e-1212636401374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l++lLl+c +a+  ++ + +++++++l elasp+g +++ Rlaay+teALa r++r +++++++ +p++ s +n++e+ +al+l+++++Pi+kf 
  XP_024987141.1 263 LISLLLACLDAIGMKNIATINHFISKLGELASPRGdSSISRLAAYYTEALALRVSRIWPNIFQISTPRDLS-QNEEENGTALRLLNQATPIPKFI 356
                     5799*******************************7799************************99999997.78899999*************** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+t N+ +l+ +eg+++vH+iDfdi+qGlQWp+L+q+LasR+++p  +RiTg+g+    sk+ l etg rL++fAe+l+++fef++ v++rled+
  XP_024987141.1 357 HFTSNEILLRTFEGKDKVHVIDFDIKQGLQWPSLFQSLASRNNPPSLIRITGIGE----SKQDLIETGARLSEFAESLNLEFEFHP-VVDRLEDV 446
                     *******************************************************....9**************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +l++L+vk+gE++aVn++lqlh++l +    +   +++  l++s++P ++v++eqe++hn++ + +r++++l+yysa+fd++++ +p +s+ r+k
  XP_024987141.1 447 RLWMLHVKEGETVAVNCILQLHKMLYDGSGGA--LRDFFGLIRSTNPSILVMAEQESEHNESMLEKRVSNSLQYYSAIFDCIDTVFPLQSHSRMK 539
                     *************************5544333..589********************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvk.sdg...yrveee.......sgslvlgWkdrpL 367
                     +E+  +grei+n++aceg er+erh  + +Wr+ + e  GFk+v+++e++  q +++l++++   g   ++v+++        + ++l W+d+pL
  XP_024987141.1 540 IEES-FGREIRNIIACEGLERFERHVGFDQWRRSMVElGGFKNVEINEREFLQSQMILKMYHhPFGpnsFKVKKRwsdggatTAGVTLSWSDQPL 633
                     ****.***************************99877479*********************965556679***88888887677888******** PP

            GRAS 368 vsvSaWr 374
                     ++vSaW+
  XP_024987141.1 634 YTVSAWT 640
                     ******6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    
MLAGCSSTLL SPRHTKPSAQ FQACHFPSMS TQRLDLPCNT NFPRKDSARS QPVRPVGSLS  60
VDNNPIESRT SSCSLKHNVV EKRPEIWENS SKGLKRLYDD EQDESFRAKR KRGCKKVEEF  120
GENEENLSLG QLGSGNFWFS KQGFVLDPAT SLPFSLSTAE EKACFAPSNV NSPQLRTSPW  180
SFVNELADLG EKGVASSSHR QQVVKETSSG SGSRSSSPES HQSLDPVAQE GGLNGVGAPN  240
PNQSLDFLAI GNENHDEEVG FELISLLLAC LDAIGMKNIA TINHFISKLG ELASPRGDSS  300
ISRLAAYYTE ALALRVSRIW PNIFQISTPR DLSQNEEENG TALRLLNQAT PIPKFIHFTS  360
NEILLRTFEG KDKVHVIDFD IKQGLQWPSL FQSLASRNNP PSLIRITGIG ESKQDLIETG  420
ARLSEFAESL NLEFEFHPVV DRLEDVRLWM LHVKEGETVA VNCILQLHKM LYDGSGGALR  480
DFFGLIRSTN PSILVMAEQE SEHNESMLEK RVSNSLQYYS AIFDCIDTVF PLQSHSRMKI  540
EESFGREIRN IIACEGLERF ERHVGFDQWR RSMVELGGFK NVEINEREFL QSQMILKMYH  600
HPFGPNSFKV KKRWSDGGAT TAGVTLSWSD QPLYTVSAWT PSDIAGASSS YQQQQQPAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein