PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987199.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 849aa MW: 93163 Da PI: 4.5733

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987199.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.3	9.5e-15	24	66	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W++eE++ l++a++ +G++ W+ + ++ gR+++ +k++w+ XP_024987199.1 24 KEAWSQEEELALINAHQIYGNK-WAELTKFLP-GRSDNAIKNHWN 66 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 849 aa Download sequence
MVHHCTTPSW SHWWHNHLNP NINKEAWSQE EELALINAHQ IYGNKWAELT KFLPGRSDNA 60 IKNHWNSSVK KKLDSYLASG LLAQSQGLPR FSHTNQSTAS TSSWVQQYSG DDSIPKDITE 120 TEDVSDCSQG STFGGCSKAT MANAIAGYAQ NESQSAENSN QDLGSYPSSG LPCELSDSSK 180 MVEQCFSHDW VTSDKDWQIS SNELQKIPSL DLSEDSEFIN CIDVDQNHEV APYPTQSSVN 240 FGASTSIGNL VVASDVAEHM LMSEDDCSRV IYPPDGSTLS YASENLYKCP NSNEDGSADS 300 LIYQPSNGEV PNDSNINSQS YYSDLLGTPC YQSICMPLQP PSGQGTNNFN SESNQFNGPS 360 INNQELPVHA HNGLPYANDS SNTDFCNSQD IVGSQNHRDQ VNDSLEVVPT DAFSLAQLQS 420 DPSVDQVHVS ETEQHDTGVL SYDPPRFPSL DIPFFSCDLV QYGGEMQHEY SPLGIRKLMM 480 SSGNCFSPYR LWDSPSRADS PEAVLKSAAK TFTGTPSILK KRNRDLCSPL SEKRCEKKLE 540 RTSFSNLARD FSRLEVMFDD SKSQESPSFS HKEDYGPFVE DKENVIPATE GREKDGGNST 600 ITKSCQVQQS SGVLTERNLD NLSFFSPDKF TTKADTPKGP NAKISGKTSS SSSEVVPDHV 660 TAMASSCDNP CQSLVSPHTV SGKKAGSCLV ASMHSAPNTV EKSGNDASVE TFGLFGETPF 720 KRSFDSPSAW KSPWFSFLPG PRVDTDITIE DIGYFVSPRE RSYDALGLMK QLSEHTAPAY 780 ANAQEVLGDE TPDSILKKRY EEKGERSRQE SNLLTERRVL DFSECGSPSK GTEGASFSSP 840 SSYLLKGCR

Sequence ? help Back to Top

Protein Sequence Length: 849 aa Download sequence

MVHHCTTPSW SHWWHNHLNP NINKEAWSQE EELALINAHQ IYGNKWAELT KFLPGRSDNA  60
IKNHWNSSVK KKLDSYLASG LLAQSQGLPR FSHTNQSTAS TSSWVQQYSG DDSIPKDITE  120
TEDVSDCSQG STFGGCSKAT MANAIAGYAQ NESQSAENSN QDLGSYPSSG LPCELSDSSK  180
MVEQCFSHDW VTSDKDWQIS SNELQKIPSL DLSEDSEFIN CIDVDQNHEV APYPTQSSVN  240
FGASTSIGNL VVASDVAEHM LMSEDDCSRV IYPPDGSTLS YASENLYKCP NSNEDGSADS  300
LIYQPSNGEV PNDSNINSQS YYSDLLGTPC YQSICMPLQP PSGQGTNNFN SESNQFNGPS  360
INNQELPVHA HNGLPYANDS SNTDFCNSQD IVGSQNHRDQ VNDSLEVVPT DAFSLAQLQS  420
DPSVDQVHVS ETEQHDTGVL SYDPPRFPSL DIPFFSCDLV QYGGEMQHEY SPLGIRKLMM  480
SSGNCFSPYR LWDSPSRADS PEAVLKSAAK TFTGTPSILK KRNRDLCSPL SEKRCEKKLE  540
RTSFSNLARD FSRLEVMFDD SKSQESPSFS HKEDYGPFVE DKENVIPATE GREKDGGNST  600
ITKSCQVQQS SGVLTERNLD NLSFFSPDKF TTKADTPKGP NAKISGKTSS SSSEVVPDHV  660
TAMASSCDNP CQSLVSPHTV SGKKAGSCLV ASMHSAPNTV EKSGNDASVE TFGLFGETPF  720
KRSFDSPSAW KSPWFSFLPG PRVDTDITIE DIGYFVSPRE RSYDALGLMK QLSEHTAPAY  780
ANAQEVLGDE TPDSILKKRY EEKGERSRQE SNLLTERRVL DFSECGSPSK GTEGASFSSP  840
SSYLLKGCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	1e-132	MYB family protein