PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987222.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 478aa MW: 53656.4 Da PI: 7.9977

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987222.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	10	32	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k +++ +L H+r+H XP_024987222.1 10 FVCKYCDKKYPSGKSLGGHMRSH 32 89********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MEEDHDELRF VCKYCDKKYP SGKSLGGHMR SHVIAAAAAA AAANSSESDE KFANLSTLMI 60 NGNGNDPSGN GNSSSYGLRE NPKKTWRAVG SSTFPFPNEK VCKQCGKGFQ SLKALCGHMA 120 CHSDKDRGMK DYDHSWTSEN LDHDDKVVTD SQSDTDEPEL QDPTRVTRSK SKRYKKLVVK 180 PYSFSLANTS NNSNYNYGSS SVSEIDELEQ EEVAMCLMML SKDSTNWAGV GFVVESSDNN 240 SAVLETKSSS IDMRISKKSS VLDAESFQFE NSNSGYSRNG TRKVESDISV EELLRNGDRN 300 KNKSKGGREL SYEEKLEIRR NLFREFGYRD PLKKRIRNDD DSYSPELERE ASHKKKNKYE 360 CLTCNKIFSS FQGLGGHRPC HKKNNLFASS KHNNRENSLE HEYGPTRNPK YEKKIRVKKS 420 KGHECPTCFR MFKSGQALGG HRRSHFINGS IGHIAATENE APTCSDMIDL NLPAPEED

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MEEDHDELRF VCKYCDKKYP SGKSLGGHMR SHVIAAAAAA AAANSSESDE KFANLSTLMI  60
NGNGNDPSGN GNSSSYGLRE NPKKTWRAVG SSTFPFPNEK VCKQCGKGFQ SLKALCGHMA  120
CHSDKDRGMK DYDHSWTSEN LDHDDKVVTD SQSDTDEPEL QDPTRVTRSK SKRYKKLVVK  180
PYSFSLANTS NNSNYNYGSS SVSEIDELEQ EEVAMCLMML SKDSTNWAGV GFVVESSDNN  240
SAVLETKSSS IDMRISKKSS VLDAESFQFE NSNSGYSRNG TRKVESDISV EELLRNGDRN  300
KNKSKGGREL SYEEKLEIRR NLFREFGYRD PLKKRIRNDD DSYSPELERE ASHKKKNKYE  360
CLTCNKIFSS FQGLGGHRPC HKKNNLFASS KHNNRENSLE HEYGPTRNPK YEKKIRVKKS  420
KGHECPTCFR MFKSGQALGG HRRSHFINGS IGHIAATENE APTCSDMIDL NLPAPEED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	8e-61	C2H2 family protein