PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987257.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 544aa    MW: 61017.7 Da    PI: 5.9699
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987257.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS396.43.1e-1211685441374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++ L++cA+a+++g +e +q l++ l+  +s dg+p+qRl ay++e+L+ar ++s+s +yk+l++ e s    +e ++++++++e++P++kf++
  XP_024987257.1 168 LKQMLIACAHAMDDGAKEDVQGLMEVLQSKVSVDGEPIQRLGAYMLEGLRARQLSSGSVIYKKLRCYEPS---AKELMSYMSILYEICPYYKFAY 259
                     5799*****************************************************************9...8999999999************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                       aN  I ea+++e+++H+iDf i qG QW+ L++ La+Rp+gpp+lR+Tgv++ +s+  +   l+ +gerL+kfA++ gvpfef++ +a + +d
  XP_024987257.1 260 TSANVVIKEAMQNERQIHVIDFLIAQGSQWIQLIEDLAKRPGGPPRLRVTGVDDFDSSyaRGGGLSLVGERLTKFAQSQGVPFEFHA-AALSGSD 353
                     ******************************************************888888999************************.899**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.... 279
                     +e  +L+v+pgEalaVn+ ++lh+++desvs++++rd++++lvk+lsPkvv++ eqe+++n++sF +rf ealeyy+a+f+s++aklpr+     
  XP_024987257.1 354 VEWGNLKVEPGEALAVNFPYMLHHMPDESVSTTNHRDRLIRLVKRLSPKVVTLLEQESNTNTSSFSKRFEEALEYYTAMFESIDAKLPRNMdlrr 448
                     **************************************************************************************888766666 PP

            GRAS 280 ..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                       + ri+ E+ +++r+ vn+vace ++r+erhe l kWr rle+aGF++ p+s++++k ++ +l++++ + yr+ +++g+lvlgWk+rp+v++Sa
  XP_024987257.1 449 ddRRRISAEENCVARDMVNIVACEDTDRVERHEPLDKWRFRLESAGFTSCPVSHSVVKAVQEVLSEFS-ECYRLGQREGALVLGWKNRPMVTCSA 542
                     668999**************************************************************.77************************ PP

            GRAS 373 Wr 374
                     Wr
  XP_024987257.1 543 WR 544
                     *8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    
MQTSQKSRSS GAAIHRLYHQ PDQVEPFCLT GSYYQILNNN GYPDAATSRR QDTSVQSFPD  60
QFFTLESSPA VDFSAYNSPF AASVSSSSRS PFSPQGSSQS CVSNLHNSSP ENTYGSPISN  120
GFELALREMK MELLGPGSDF EDGSITSSFD NVNRYHKMLQ MGISNLDLKQ MLIACAHAMD  180
DGAKEDVQGL MEVLQSKVSV DGEPIQRLGA YMLEGLRARQ LSSGSVIYKK LRCYEPSAKE  240
LMSYMSILYE ICPYYKFAYT SANVVIKEAM QNERQIHVID FLIAQGSQWI QLIEDLAKRP  300
GGPPRLRVTG VDDFDSSYAR GGGLSLVGER LTKFAQSQGV PFEFHAAALS GSDVEWGNLK  360
VEPGEALAVN FPYMLHHMPD ESVSTTNHRD RLIRLVKRLS PKVVTLLEQE SNTNTSSFSK  420
RFEEALEYYT AMFESIDAKL PRNMDLRRDD RRRISAEENC VARDMVNIVA CEDTDRVERH  480
EPLDKWRFRL ESAGFTSCPV SHSVVKAVQE VLSEFSECYR LGQREGALVL GWKNRPMVTC  540
SAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein