PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987280.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CAMTA

Protein Properties

Length: 985aa MW: 109889 Da PI: 6.3584

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987280.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	167	3.2e-52	12	127	2	116
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e ++rwl++ e++ iL+n+++ +l +e++++p+sgsl+L+n++++r+frkDG+sw+kkk+gk v E+he+LKvg+ve+l+cyYah+++np+fq XP_024987280.1 12 IQEaQSRWLRPGEVLFILKNYQENQLNHEPPEKPPSGSLFLFNKRVLRFFRKDGHSWRKKKNGKNVGEAHERLKVGNVEALNCYYAHGDQNPNFQ 106 45669**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhyle 116 rr+yw+L+ ++e+ivlvhy++ XP_024987280.1 107 RRSYWMLDLAMEHIVLVHYRD 127 *****************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 985 aa Download sequence
MMMSGYNIKD LIQEAQSRWL RPGEVLFILK NYQENQLNHE PPEKPPSGSL FLFNKRVLRF 60 FRKDGHSWRK KKNGKNVGEA HERLKVGNVE ALNCYYAHGD QNPNFQRRSY WMLDLAMEHI 120 VLVHYRDITI GKYSAGPAGP TLGSSNIIQD SNSYANQPLL SADASAFGGP YNSISGPSPV 180 EISPDVVTKS NGASCLNLTE QIEEIDGSPD FQIYQALKRM EDKWSLDHPK DTGSFFSKNE 240 HPNELGFTIN EQSYSGSEGL QYGSDDYVSL QYSGLDKAQE QLSTPKTGAT DYGRLHQYHQ 300 LPKEFTIPSQ QTLIWEDMQK YDKSASCDDL LENYLYPSDK NEVLLPRLRS DPVEEQGKYH 360 SGDTGHSNGS SILLSQELED STFPSYTPPR NMYQSDPDLY STLFDQGQTR TLLASGSTLT 420 IAQEQKFTIR VISPEWGYTT EPTKVLIVGS FTCDPSNRAW VCMFGDTEVP VEIIQEGVIC 480 CQAPLHSPGK VTICITSGNR EACSEVREFE YRDKQSMYVR TNLTENESSR SSKELSLLVK 540 FVQMLLSDQV GQNGKSVGID LLESSMAGEE SWAQVIEALS DGHLASSKTS DWLLEELLKD 600 KLQWWLSSKL QDKNALPALS KKEQGIIHMV SGLGFVWALT PILKSGVGIN YRDIKGWTAL 660 HWAARFGREK MVAELVASGA YAGAVTDPSE QEPTGKTPAS LAAGYGHKGL AGYLSEVALT 720 SHLSSLTLKE SELSKCSADV EAERTVNSIS NSNLIVNEDH LSLKDMFAAV RNAAQAASRI 780 QAAFRAHSFK KRKQEAAAYA RGDGYEILPS DIESLSAASK LAFGNARHHS AALSIQKKYR 840 GWKSRKNFLD LRQKVVKIQA HVRGHQARKN YEAICWAVGI VEKIVLRWYR KGVGLRGFHL 900 DSIDENGDED IIKVFRKQNV DVALSEAVSR VLSMVNSPPA RRQYGRMLQK YQQAKAERGG 960 GLESEGASTS QDMETEDLYD EWLIS

Sequence ? help Back to Top

Protein Sequence Length: 985 aa Download sequence

MMMSGYNIKD LIQEAQSRWL RPGEVLFILK NYQENQLNHE PPEKPPSGSL FLFNKRVLRF  60
FRKDGHSWRK KKNGKNVGEA HERLKVGNVE ALNCYYAHGD QNPNFQRRSY WMLDLAMEHI  120
VLVHYRDITI GKYSAGPAGP TLGSSNIIQD SNSYANQPLL SADASAFGGP YNSISGPSPV  180
EISPDVVTKS NGASCLNLTE QIEEIDGSPD FQIYQALKRM EDKWSLDHPK DTGSFFSKNE  240
HPNELGFTIN EQSYSGSEGL QYGSDDYVSL QYSGLDKAQE QLSTPKTGAT DYGRLHQYHQ  300
LPKEFTIPSQ QTLIWEDMQK YDKSASCDDL LENYLYPSDK NEVLLPRLRS DPVEEQGKYH  360
SGDTGHSNGS SILLSQELED STFPSYTPPR NMYQSDPDLY STLFDQGQTR TLLASGSTLT  420
IAQEQKFTIR VISPEWGYTT EPTKVLIVGS FTCDPSNRAW VCMFGDTEVP VEIIQEGVIC  480
CQAPLHSPGK VTICITSGNR EACSEVREFE YRDKQSMYVR TNLTENESSR SSKELSLLVK  540
FVQMLLSDQV GQNGKSVGID LLESSMAGEE SWAQVIEALS DGHLASSKTS DWLLEELLKD  600
KLQWWLSSKL QDKNALPALS KKEQGIIHMV SGLGFVWALT PILKSGVGIN YRDIKGWTAL  660
HWAARFGREK MVAELVASGA YAGAVTDPSE QEPTGKTPAS LAAGYGHKGL AGYLSEVALT  720
SHLSSLTLKE SELSKCSADV EAERTVNSIS NSNLIVNEDH LSLKDMFAAV RNAAQAASRI  780
QAAFRAHSFK KRKQEAAAYA RGDGYEILPS DIESLSAASK LAFGNARHHS AALSIQKKYR  840
GWKSRKNFLD LRQKVVKIQA HVRGHQARKN YEAICWAVGI VEKIVLRWYR KGVGLRGFHL  900
DSIDENGDED IIKVFRKQNV DVALSEAVSR VLSMVNSPPA RRQYGRMLQK YQQAKAERGG  960
GLESEGASTS QDMETEDLYD EWLIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-173	CAMTA family protein