PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987281.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CAMTA

Protein Properties

Length: 900aa MW: 101200 Da PI: 6.8224

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987281.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	167.1	2.8e-52	12	127	2	116
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e ++rwl++ e++ iL+n+++ +l +e++++p+sgsl+L+n++++r+frkDG+sw+kkk+gk v E+he+LKvg+ve+l+cyYah+++np+fq XP_024987281.1 12 IQEaQSRWLRPGEVLFILKNYQENQLNHEPPEKPPSGSLFLFNKRVLRFFRKDGHSWRKKKNGKNVGEAHERLKVGNVEALNCYYAHGDQNPNFQ 106 45669**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhyle 116 rr+yw+L+ ++e+ivlvhy++ XP_024987281.1 107 RRSYWMLDLAMEHIVLVHYRD 127 *****************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 900 aa Download sequence
MMMSGYNIKD LIQEAQSRWL RPGEVLFILK NYQENQLNHE PPEKPPSGSL FLFNKRVLRF 60 FRKDGHSWRK KKNGKNVGEA HERLKVGNVE ALNCYYAHGD QNPNFQRRSY WMLDLAMEHI 120 VLVHYRDITI ALKRMEDKWS LDHPKDTGSF FSKNEHPNEL GFTINEQSYS GSEGLQYGSD 180 DYVSLQYSGL DKAQEQLSTP KTGATDYGRL HQYHQLPKEF TIPSQQTLIW EDMQKYDKSA 240 SCDDLLENYL YPSDKNEVLL PRLRSDPVEE QGKYHSGDTG HSNGSSILLS QELEDSTFPS 300 YTPPRNMYQS DPDLYSTLFD QGQTRTLLAS GSTLTIAQEQ KFTIRVISPE WGYTTEPTKV 360 LIVGSFTCDP SNRAWVCMFG DTEVPVEIIQ EGVICCQAPL HSPGKVTICI TSGNREACSE 420 VREFEYRDKQ SMYVRTNLTE NESSRSSKEL SLLVKFVQML LSDQVGQNGK SVGIDLLESS 480 MAGEESWAQV IEALSDGHLA SSKTSDWLLE ELLKDKLQWW LSSKLQDKNA LPALSKKEQG 540 IIHMVSGLGF VWALTPILKS GVGINYRDIK GWTALHWAAR FGREKMVAEL VASGAYAGAV 600 TDPSEQEPTG KTPASLAAGY GHKGLAGYLS EVALTSHLSS LTLKESELSK CSADVEAERT 660 VNSISNSNLI VNEDHLSLKD MFAAVRNAAQ AASRIQAAFR AHSFKKRKQE AAAYARGDGY 720 EILPSDIESL SAASKLAFGN ARHHSAALSI QKKYRGWKSR KNFLDLRQKV VKIQAHVRGH 780 QARKNYEAIC WAVGIVEKIV LRWYRKGVGL RGFHLDSIDE NGDEDIIKVF RKQNVDVALS 840 EAVSRVLSMV NSPPARRQYG RMLQKYQQAK AERGGGLESE GASTSQDMET EDLYDEWLIS

Sequence ? help Back to Top

Protein Sequence Length: 900 aa Download sequence

MMMSGYNIKD LIQEAQSRWL RPGEVLFILK NYQENQLNHE PPEKPPSGSL FLFNKRVLRF  60
FRKDGHSWRK KKNGKNVGEA HERLKVGNVE ALNCYYAHGD QNPNFQRRSY WMLDLAMEHI  120
VLVHYRDITI ALKRMEDKWS LDHPKDTGSF FSKNEHPNEL GFTINEQSYS GSEGLQYGSD  180
DYVSLQYSGL DKAQEQLSTP KTGATDYGRL HQYHQLPKEF TIPSQQTLIW EDMQKYDKSA  240
SCDDLLENYL YPSDKNEVLL PRLRSDPVEE QGKYHSGDTG HSNGSSILLS QELEDSTFPS  300
YTPPRNMYQS DPDLYSTLFD QGQTRTLLAS GSTLTIAQEQ KFTIRVISPE WGYTTEPTKV  360
LIVGSFTCDP SNRAWVCMFG DTEVPVEIIQ EGVICCQAPL HSPGKVTICI TSGNREACSE  420
VREFEYRDKQ SMYVRTNLTE NESSRSSKEL SLLVKFVQML LSDQVGQNGK SVGIDLLESS  480
MAGEESWAQV IEALSDGHLA SSKTSDWLLE ELLKDKLQWW LSSKLQDKNA LPALSKKEQG  540
IIHMVSGLGF VWALTPILKS GVGINYRDIK GWTALHWAAR FGREKMVAEL VASGAYAGAV  600
TDPSEQEPTG KTPASLAAGY GHKGLAGYLS EVALTSHLSS LTLKESELSK CSADVEAERT  660
VNSISNSNLI VNEDHLSLKD MFAAVRNAAQ AASRIQAAFR AHSFKKRKQE AAAYARGDGY  720
EILPSDIESL SAASKLAFGN ARHHSAALSI QKKYRGWKSR KNFLDLRQKV VKIQAHVRGH  780
QARKNYEAIC WAVGIVEKIV LRWYRKGVGL RGFHLDSIDE NGDEDIIKVF RKQNVDVALS  840
EAVSRVLSMV NSPPARRQYG RMLQKYQQAK AERGGGLESE GASTSQDMET EDLYDEWLIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-174	CAMTA family protein