PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987294.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 407aa MW: 45035.3 Da PI: 6.9316

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987294.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	7.3e-13	336	381	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P+ +k + a++L +AveYIk+Lq XP_024987294.1 336 SIAERVRRTRISERIKRLQELFPNM----DKQTNTADMLDMAVEYIKDLQ 381 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MYGHGGGGSS DAISRDMNSL LYSSTFKHPA DGEFAKIKQL ISLDPYPNYD HHDHNQQQQD 60 ENHGSNHSSL LRYRSTPSSF FSNLLDDNGD EEFPDPVTAS SNHQSKAEES YFTGNQQKKS 120 ESDARDFLQF ESSSSKPERK ESAIQNQDLP PPSTAAMHGG SSRRAPNLPP SNNNSSYGYT 180 NQNNLDSASS FRVMDSTSSN LIRQSSSPDG FLSCLTVDNG FGGMKDARKG SSSSSSLNNH 240 ISFSLGPSSS SRFLPQIVEN ESDSTFGSLK RSRDGGLKMP QNGEAGNHIP SLVHHMSLPK 300 TSSEMADVEN ILHFQQESLV PWKARAKRGF ATHPRSIAER VRRTRISERI KRLQELFPNM 360 DKQTNTADML DMAVEYIKDL QKELQSLNEA QARCKCSSKQ LQPGSTM

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MYGHGGGGSS DAISRDMNSL LYSSTFKHPA DGEFAKIKQL ISLDPYPNYD HHDHNQQQQD  60
ENHGSNHSSL LRYRSTPSSF FSNLLDDNGD EEFPDPVTAS SNHQSKAEES YFTGNQQKKS  120
ESDARDFLQF ESSSSKPERK ESAIQNQDLP PPSTAAMHGG SSRRAPNLPP SNNNSSYGYT  180
NQNNLDSASS FRVMDSTSSN LIRQSSSPDG FLSCLTVDNG FGGMKDARKG SSSSSSLNNH  240
ISFSLGPSSS SRFLPQIVEN ESDSTFGSLK RSRDGGLKMP QNGEAGNHIP SLVHHMSLPK  300
TSSEMADVEN ILHFQQESLV PWKARAKRGF ATHPRSIAER VRRTRISERI KRLQELFPNM  360
DKQTNTADML DMAVEYIKDL QKELQSLNEA QARCKCSSKQ LQPGSTM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	4e-53	bHLH family protein