PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987309.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 297aa    MW: 33026.5 Da    PI: 9.2733
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987309.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.84.9e-134488147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r++WT  E++++++a +++  + Wk+I + +g  +t+ q++s+ qky
   XP_024987309.1 44 RQNWTDIEHDKFLEALHLFDRD-WKKIEAFVG-SKTAIQIRSHAQKY 88
                     89******************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MGFDSLLPAP VSTDNSLATV DFSNSLLDDP SKKIRKPYTI TKSRQNWTDI EHDKFLEALH  60
LFDRDWKKIE AFVGSKTAIQ IRSHAQKYFL KVQKSGTKEH VPPPRPKRKA AHPYPHKAPK  120
NGVPKVEGIL QPTADLIEHT DSYLWPTNAC STAGLASWMY NTIAPPDLPT KDDVRSSGAA  180
ISHNCCSSSI DSGPGIWPTG ETNNQQEVKQ RVAGRVMPDF PKVYRFIGGI FDPNESNHLQ  240
KLKMMDSVDV ETVILLMKNL CANLKSPQFE DYRRLFSSYD VGSGKVVSSS GRAIPSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.19e-74MYB_related family protein