PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987319.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 441aa    MW: 49886.6 Da    PI: 5.1523
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987319.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS293.65.2e-90574342373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfs 94 
                     ++lLl+cA+a++++d + aq++++ l++ as +gdp+qRla+ f++AL +r +r +++ ++    +++    + + +++++l  ++++ P+++f+
  XP_024987319.1  57 EKLLLHCANALENSDINSAQQVMWVLNNVASTSGDPNQRLASWFLRALISRSSRVCPTPMNFNGGRSAF---QRRLMSVTELagYVDLIPWHRFG 148
                     689**************************************************9666666544333332...344444444466*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl..... 181
                     + + N+aI +a++g+ +vHi+Df+i++++QWp+L++aLa+R+egppslRi + +   s+    +  +ee+g rL++fA+  +vpfefnv+     
  XP_024987319.1 149 FCASNSAIFKAIQGCPKVHILDFSITHCMQWPTLIDALAKRTEGPPSLRISVPSWRPSVppfLNVLTEEVGMRLTNFANFRNVPFEFNVIevsps 243
                     ***************************************************9888666688889999***********************65544 PP

            GRAS 182 vakrledleleeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                     ++++  ++++e L +++     +Eal++n++  l +++d+  s     d++L+++ksl+P+v+++v++++d++s+s++ r++ ++++++  fd+l
  XP_024987319.1 244 MEESSFNFNYEFLLTQTnlfqdDEALVINCQNWLRYMPDQASSK----DSFLEVIKSLNPHVLTIVDEDSDLGSTSLASRITTCFNFMWIPFDAL 334
                     3344445678888666667778***************9555544....46********************************************* PP

            GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                     e+ lp++s +r+ +E+  +g +i+n++  eg++r+er e+ +k ++r+++ GF +vp++e++ +++k ll +++  g+ ++ e++ +vl+Wk+++
  XP_024987319.1 335 ETFLPKDSCQRMEYEAD-IGHKIENIIGFEGRQRIERLESGAKFSQRMRNLGFYSVPFGEDTISEVKFLLDEHA-SGWGMKTEDDMIVLTWKGHN 427
                     *****************.********************************************************.88999999************ PP

            GRAS 367 LvsvSaW 373
                      v ++aW
  XP_024987319.1 428 SVYATAW 434
                     ******* PP
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    
MYRSQVISQI DMKAELRSNT TSISLSNQSS TLFNSHQNPF SGALKGCLGN LDGACIEKLL  60
LHCANALENS DINSAQQVMW VLNNVASTSG DPNQRLASWF LRALISRSSR VCPTPMNFNG  120
GRSAFQRRLM SVTELAGYVD LIPWHRFGFC ASNSAIFKAI QGCPKVHILD FSITHCMQWP  180
TLIDALAKRT EGPPSLRISV PSWRPSVPPF LNVLTEEVGM RLTNFANFRN VPFEFNVIEV  240
SPSMEESSFN FNYEFLLTQT NLFQDDEALV INCQNWLRYM PDQASSKDSF LEVIKSLNPH  300
VLTIVDEDSD LGSTSLASRI TTCFNFMWIP FDALETFLPK DSCQRMEYEA DIGHKIENII  360
GFEGRQRIER LESGAKFSQR MRNLGFYSVP FGEDTISEVK FLLDEHASGW GMKTEDDMIV  420
LTWKGHNSVY ATAWFPYGFE D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-121GRAS family protein