PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987412.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27870.5 Da    PI: 9.4668
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987412.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.46e-312473150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRr g+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_024987412.1 24 KRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73
                    79***********************************************8 PP
2K-box115.84e-38951887100
           K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      s++ea+a+ +qqe+akL+ +i nLq+++R+++Ge+L+++  k+L++Le++Lek++++iRskKnell+++ie++qk+e+el++ n+ Lr+k++e
  XP_024987412.1  95 GSVAEANAQFYQQEAAKLRHQIANLQNQNRNIMGESLGNMPAKDLKNLESKLEKGISRIRSKKNELLFAEIEYMQKRENELHNSNQFLRAKIAE 188
                     45899**************************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MSFPNDSGEM SPQRKLGRGK IEIKRIENTT NRQVTFCKRR SGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYANNSVKGT IDRYKKACLD PPSSGSVAEA NAQFYQQEAA KLRHQIANLQ  120
NQNRNIMGES LGNMPAKDLK NLESKLEKGI SRIRSKKNEL LFAEIEYMQK RENELHNSNQ  180
FLRAKIAENE RAQQQHMSLM PGSSDYDQLV APHQPFDGRN YLQVNDLQPN NNYSCQDQTP  240
LQLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-123MIKC_MADS family protein