PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987456.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 191aa MW: 21381.3 Da PI: 6.7306

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987456.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.1	6.2e-43	31	129	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaC++lrr+C+++C+lap+fp ++p kf ++h++FGasnv+kll++lpe++r+da++s+vyeA+ar+rdPvyG++g i++lq+q+++l+a+la XP_024987456.1 31 PCAACRMLRRRCVEKCILAPHFPPDEPLKFTVAHRIFGASNVIKLLQELPESQRTDAVNSMVYEANARIRDPVYGCTGAIFQLQNQVNELQAQLA 125 7********************************************************************************************** PP DUF260 96 llke 99 ++k+ XP_024987456.1 126 KAKA 129 9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence
MMANDHLNGT MPPRCSSFSS RSSRTLAVLT PCAACRMLRR RCVEKCILAP HFPPDEPLKF 60 TVAHRIFGAS NVIKLLQELP ESQRTDAVNS MVYEANARIR DPVYGCTGAI FQLQNQVNEL 120 QAQLAKAKAD VLNIQCQYAA LVCIKTSRSP QTSSEESFDG LKNSFDESFQ SSNPSFYLDN 180 EQDPLWDTIW A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-65	LBD family protein