PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987590.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NF-YA

Protein Properties

Length: 355aa MW: 40088.1 Da PI: 9.7318

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987590.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.4	2e-32	198	254	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++p+YVNaKQy++Il+RRq+Rak+e +kk+ +ksrkpylheSRh+hA++R+Rg+gGrF XP_024987590.1 198 EDPVYVNAKQYHGILRRRQSRAKAELKKKV-IKSRKPYLHESRHQHAMKRARGCGGRF 254 58**************************.************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MNGFEFSFSI ILKIPIFYSL PTTGYCGMRV MWLVIYTGFG VRITGFMVNL MESRTMPAKP 60 QDEDRRREAE EQNISPSAVY SQPWWHGIGN GVMSSFGETN GVIKVGAQLQ TTSDAVAEDT 120 DASTVPQSGL NMNNGQEQQV KQVETSSPME LVGHSIVLTS YPYQDTHFTG MMTYGTQAHP 180 RLLGIHQTRM PLPLQTEEDP VYVNAKQYHG ILRRRQSRAK AELKKKVIKS RKPYLHESRH 240 QHAMKRARGC GGRFLNTKKL GSDSTANSTA QKEPKSMSTQ SFNSDHLSTD YAGNSSIFED 300 VLKRNTSSNG NNNDHHSLSS TYNFHLMGRE EGVHYFKREK GNMVNQVPKR DPYYK

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MNGFEFSFSI ILKIPIFYSL PTTGYCGMRV MWLVIYTGFG VRITGFMVNL MESRTMPAKP  60
QDEDRRREAE EQNISPSAVY SQPWWHGIGN GVMSSFGETN GVIKVGAQLQ TTSDAVAEDT  120
DASTVPQSGL NMNNGQEQQV KQVETSSPME LVGHSIVLTS YPYQDTHFTG MMTYGTQAHP  180
RLLGIHQTRM PLPLQTEEDP VYVNAKQYHG ILRRRQSRAK AELKKKVIKS RKPYLHESRH  240
QHAMKRARGC GGRFLNTKKL GSDSTANSTA QKEPKSMSTQ SFNSDHLSTD YAGNSSIFED  300
VLKRNTSSNG NNNDHHSLSS TYNFHLMGRE EGVHYFKREK GNMVNQVPKR DPYYK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.2	6e-43	NF-YA family protein