PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024987607.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 302aa MW: 33940.4 Da PI: 6.2577

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024987607.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	74.3	1.5e-23	123	184	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST.TEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp.kvveitYegeHnhe 59 D y+WrKYGqKe+ +s+fpr Y+rCt++ gC++ k+v+r +e+ + ++itY g H+++ XP_024987607.1 123 ADDYEWRKYGQKEILNSQFPRCYFRCTHKdghGCKALKQVQRLEEELsSKFQITYFGLHTCP 184 69************************99999******98852679*******97 PP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence
MEKNDTILVE TLTRGRNSAI RLLNLLRRKE NGDGLVSADD LLKEIFRSLV DGLSMLNFSG 60 PGEDYRVQAS PSQVGLACSV NQSSEVFTGD IGKIPPPSEN KGRGRYKRRR GIDSRIIVSD 120 TIADDYEWRK YGQKEILNSQ FPRCYFRCTH KDGHGCKALK QVQRLEEELS SKFQITYFGL 180 HTCPTPHAVS DHGPGVILDF EGFRNRENLP NNPSITGKIR EDCSRKQNDP SNKTVSSAAC 240 LVSMERSTDD LDXRDKAPRF DHQDSCPTNI XDGCLNDDFL GDISTDDMLS MIESYWGGNN 300 RT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	134	KRRRGIDSRIIVSDTIADDYEWRKYGQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40750.1	2e-24	WRKY family protein