PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987801.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 440aa    MW: 50529.2 Da    PI: 6.972
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987801.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.3e-06730126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ykt+lC  + + G+C++  +C+FaHg
  XP_024987801.1  7 YKTRLCVLYKK-GHCPR-QTCSFAHG 30
                    9******9999.*****.*******9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    
MVERKLYKTR LCVLYKKGHC PRQTCSFAHG DAELRRFNTS SSFNGRRDYH GSDLRDKLGR  60
RHSPSRRNFL DTDATDRRPF RGHDSPRSGK NSDWNHKKRQ QFDGESDFSG SLRMSDGAKD  120
QAKDRKPTSL EFKNAHDEQL KQLKSEVDML EDDKQHLEIY LEERVQEADS LNSKINELEM  180
QLSSEKDEYK RISSKIRKFV KAYNHHSKIQ DELKRSEARL QKLGEHLGSD VRTATNEEDV  240
NINILSEEEM LGNHLTGPRI KQHNDASPSK KRLRVRAYED LKQAENVTKG EGLSTGRARF  300
EKHSRWDPDL TQFKDSKEIG RDINGISNGR SLLNEGKPKH SMFTSSPLAD KLKDSKSGLD  360
FPITGIAAHA ADELVDVVEL DEKFEEEETY YMRGEKGQLP LPPPPPPPPP PSVLQKAYLQ  420
YKEKDENADV DDEMVDVDIV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.16e-58C3H family protein