PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024987806.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family WRKY
Protein Properties Length: 444aa    MW: 48386.8 Da    PI: 9.6744
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024987806.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.78.6e-32201257259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +DgynWrKYGqK+vkgse+prsYY+Ct ++C+vkkkver+  d+ v+ei+Y+g+Hnh+
  XP_024987806.1 201 EDGYNWRKYGQKQVKGSEYPRSYYKCTNQNCRVKKKVERNL-DGLVTEIIYNGQHNHQ 257
                     7****************************************.***************8 PP
2WRKY103.31.3e-32350407158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+a+dp +v++tYeg+Hnh
  XP_024987806.1 350 LDDGYKWRKYGQKVVKGNRHPRSYYKCTSQGCKVRKHVERAASDPMAVITTYEGKHNH 407
                     59******************************************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    
MDEKRRLISS SAPYLRPTIS IPSSSTVENL FTGGGGRPGE SPGPMTLISN FFSNNDVESD  60
CRSFSQLLAG TMSSPAQIPG RILSRDSDAG ADASGGGAAV DFQFSNAGRA SGLVVTQAST  120
FTIPPGLSPA TLLDSPGFFL PAQVTTQAAQ LQPKATTTRH RLPPPMPDHT TTKQSPEFSS  180
SGGHSHSHSQ PPSVAADKPS EDGYNWRKYG QKQVKGSEYP RSYYKCTNQN CRVKKKVERN  240
LDGLVTEIIY NGQHNHQPPR SEYAGVGTSG EPESFKGQTG NFNHSRVDAM SMKGDQRSGS  300
SDGKEASDDV TMPQAKRRNV EVKAVDPVSS HRTVTEPRIV VQATSEIDLL DDGYKWRKYG  360
QKVVKGNRHP RSYYKCTSQG CKVRKHVERA ASDPMAVITT YEGKHNHLVP VVRNNNHDTT  420
KETASQLRPH GPIGHLRLKD EQIM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-111WRKY family protein